Program

Program at a glance

12th 13th 14th 15th
Tue Wed Thu Fri
09:00 - 09:30 Registration 09:00 - 10:00 Grouping 09:00 - 12:00 Tutorials 09:00 - 15:00 Hackathon
09:30 - 18:00 Symposium 11:00 - 17:00 Hackathon 12:00 - 17:00 Hackathon

19:00 - 21:00 Welcome Dinner 17:00 - 18:00 Writing Workshop 17:00 - 18:00 Writing Workshop 15:00 -  Writing Workshop

Registration

The registration desk will be open from 09:00. Registration for the symposium is free, but the ticket for the welcome dinner is 4,000JPY. Those who registered to join the welcome dinner are asked to prepare 4,000JPY in cash for the registration.

Symposium (12th, Tuesday) (Tentative) (To be live cast on TogoTV)

09:30 - 11:00 90 Session 1
09:30 10 Opening [slides]
09:40 40 Extracting information about drugs from the literature and drug labels Keynote [slides] Dina Demner-Fushman
10:20 10 Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data [slides] Juan Banda
10:30 10 Biotea and Bioschemas knowledge graph [slides] Leyla Jael García Castro, Olga X. Giraldo, Alexander Garcia and Dietrich Rebholz-Schuhmann
10:40 10 Improving spaCy dependency annotation and PoS tagging webservice using independent NER services [slides] Nico Colic
10:50 10 Interconnecting the LAPPS Grid and PubAnnotation for Rapid Development of Corpus Annotation with Machine Learning in the Loop [slides] Nancy Ide, Keith Suderman and Jin-Dong Kim
11:00 - 11:20 20 Coffee Break
11:20 - 12:40 80 Session 2
11:20 40 CLEF eHealth: an evaluation challenge to improve access to health information for patients, their next-of-kins and clinical staff Keynote [slides] Lorraine Goeuriot
12:00 40 7 years BioASQ: Lessons learnt and the road ahead Keynote [slides] George Paliouras
12:40 - 14:00 80 Lunch
14:00 - 15:40 100 Session 3
14:00 40 Getting off the gold standard? Keynote [slides] Lynette Hirschman
14:40 10 Introduction to BioNLP Open Shared Tasks [slides] Jin-Dong Kim, Claire Nédellec,Robert Bossy, Louise Deleger
14:50 10 Bacteria Biotope 2019 -- Extracting information about bacterial biotopes and phenotypes [slides] Mouhamadou Ba, Robert Bossy, Estelle Chaix, Louise Deleger and Claire Nédellec
15:00 10 SeeDev 2019 -- Event extraction of genetic and molecular mechanisms involved in plant seed development [slides] Mouhamadou Ba, Robert Bossy, Estelle Chaix, Louise Deleger and Claire Nédellec
15:10 10 CRAFT: Integrated structure, semantics and coreference task proposal for BioNLP-OST 2019 [slides] William Baumgartner
15:20 10 Entity/Relation Recognition and GOF/LOF Mutated Gene Text Identification Task based on AGAC corpus [slides] Jingbo Xia
15:30 10 PharmaCoNER: Pharmacological substances, Compounds and proteins Named Entity Recognition track [slides] Martin Krallinger, Felipe Soares, Ander Intxaurrondo, Montserrat Marimon, Jose Antonio Lopez-Martin and Obdulia Rabal
15:40 - 16:00 20 Coffee Break
16:00 - 18:00 75 Session 4
16:00 40 Multilingual Clinical NLP Keynote [slides] Aurélie Névéol
16:40 10 CONTES and HONOR: a new automatic annotating tool for entity normalization with ontologies [slides] Arnaud Ferré, Mouhamadou Ba, Louise Deléger, Robert Bossy and Claire Nédellec
16:50 10 Linking Biomedical Publications and Knowledge using the INCEpTION annotation platform Richard Eckart de Castilho, Jan-Christoph Klie and Iryna Gurevych
17:00 5 Oryzabase - Japanese Rice genes proteins dataset for Named Entity Recognition [slides] Huy Đỗ and Pierre Larmande
17:05 5 A workaround for the problem of clinical data sharing: towards a shared task on clinical text anonymization Mizuki Morita
17:10 5 Survey of Japanese Medical Vocabularies and Preliminary Attempt for Integration Yuka Tateisi
17:15 - 17:20 5 Short Break
17:20 - 18:00 40 Panel Discussion and Closing
Ċ
Jin-Dong Kim,
Feb 11, 2019, 5:06 PM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:15 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:15 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 18, 2019, 12:16 AM
Ċ
Jin-Dong Kim,
Feb 11, 2019, 5:06 PM
Ċ
Jin-Dong Kim,
Feb 11, 2019, 5:06 PM
Ċ
Jin-Dong Kim,
Feb 11, 2019, 5:06 PM